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Rackable Linux Cluster of Opterons (rcluster)

Software and Libraries Installed on rcluster

Bioinformatics Applications:

• Artemis
• Bali-phy
• Bioconductor
• Bioperl
• Blast (NCBI)
• Blast (RCC Batch)
• CAP3
• Clustalw
• CONSEL
• EMBOSS
• FASTA
• GCG
• Genezilla
• Genome(phred/phrap/consed)
• Hmmer
• iprscan
• LUCY
• MrBayes
• MUMmer
• MUSCLE
• PAML
• phylip
• PhyML
• Polybayes
• RCCBatchBlast
• RECON
• RepeatMasker
• SVM_Light
• WUBlast

Please check specific applications at Bioinformatics Application page

Computational Chemistry Applications:

• NAMD
• VMD
• XPLOR-NIH

Statistics Application:

• R

Utilities:

• Compilers
• Debuggers
• Profilers
• Math Libraries
• Scripting Languages

Others:

• MatLab