PolyBayes

Category(ies): Bioinformatics

Author / Distributor:
Gabor T. Marth, Washington University, St. Louis, Missouri

The PolyBayes computer program is primarily designed as a tool for reliable discovery of single-nucleotide polymorphisms (SNPs) in redundant sequence data. SNP detection is performed through the analysis of base-wise multiple alignments of clustered DNA sequences. The program provides additional (optional) utilities to aid in the creation of such multiple alignments and to identify sequences within these alignments that are likely to represent closely related sequence duplicates originating from disparate genomic locations (e.g. representing members of multi-gene families, repeats, and local inverted or tandem duplications).

altix: running program | Documentation | Installation | System

Running Program:

polybayes -h

for options

To run to polybayes or the wrappers, run-polybayes-map-long, run-polybayes-map-short, run-polybayes-ace-long, run-polybayes-ace-short
First run presetting

RCCPBSetting.pl

Then run the wrappers

Documentation:

Publication and slide show are available here
online document at
more /usr/local/polybayers/doc/INSTALL
more /usr/local/polybayers/doc/DOCUMENT

Installation:

Application and license aquired from http://genomeold.wustl.edu/groups/informatics/software/polybayes/

System(s): Unix

inQuiry: not available at inQuiry

pcluster: Not available on pcluster

rcluster,IOB: running program | Documentation | Installation | System

Running Program: also refer to submit jobs to queues at rcluster,IOB

bsub -q queueName polybayes

Documentation: Same as altix

Installation: Same as altix

System(s): Unix