PHYLIP (PHYLogeny Inference Package)

Category(ies): Bioinformatics

Author / Distributor:
Department of Genome Sciences and Department of Biology, University of Washington

A package of programs for inferring phylogenies (evolutionary trees)
Methods in the package include parsimony, distance matrix, and likelihood methods, including bootstrapping and consensus trees. Data types that can be handled include molecular sequences, gene frequencies, restriction sites and fragments, distance matrices, and discrete characters.
Please refer to PHYLIP for detail programs.

altix: Not available on altix

pcluster: Not available on pcluster

rcluster,IOB: running program | Documentation | Installation | System

Running Program: also refer to submit jobs to queues at rcluster,IOB

Please refer to PHYLIP for detail commands

/usr/local/phylip/exe/application-name ...

bsub -q queueName /usr/local/phylip/exe/application-name .. -o filename.out

Documentation: Online document available at PHYLIP website

Installation: source downloaded from PHYLIP website.

System(s): Unix