LUCY

Category(ies): Bioinformatics

Lucy is a utility that prepares raw DNA sequence fragments for sequence assembly, possibly using the TIGR Assembler. The cleanup process includes quality assessment, confidence reassurance, vector trimming and vector removal. The primary advantage of Lucy over other similar utilities is that it is a fully integrated, stand alone program.

altix: running program | Documentation | Installation | System

Running Program:

lucy -v PUC19 PUC19splice atie.seq atie.qul atie.2nd -debug lucy.info

where
PUC19 and PUC19splice are the complete vector sequence file and a partial splice site sequence file.
atie.seq is a seq file and atie.qul is the corresponding quilt.
atie.2nd is a 2nd sequence file

use following command to make a copy of samples at your local test directory

cp /usr/local/doc/lucy/PUC19splice PUC19splice
cp /usr/local/doc/lucy/PUC19 PUC19
cp /usr/local/doc/lucy/atie.2nd atie.2nd
cp/usr/local/doc/lucy/atie.seq atie.seq
cp /usr/local/doc/lucy/atie.qul atie.qul

Documentation:

man lucy

Installation:

Source code downloaded from http://www.tigr.org/index.shtml
Compiled by gcc

System(s): Unix

inQuiry: not available at inQuiry

pcluster: Not available on pcluster

rcluster,IOB: running program | Documentation | Installation | System

Running Program: also refer to submit jobs to queues at rcluster,IOB

bsub -q queueName lucy -v PUC19 PUC19splice atie.seq atie.qul atie.2nd -debug lucy.info

Documentation: Same as altix

Installation: Same as altix

System(s): Unix