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Genezilla

Category | Version | Author | Description
Program on:altix | inQuiry | pcluster | rcluster, IOB

Category(ies): Bioinformatics

Version: 1.0

Author / Distributor:

Bill Majoros (bmajoros@tigr.org) The Institute for Genomic Research

Description:

GeneZilla is a program for computational prediction of protein-coding genes in eukaryotic DNA, and is based on the Generalized Hidden Markov Model (GHMM) framework, similar to GENSCAN and GENIE.

altix: Not available on pcluster

inQuiry: avaiable at inQuiry

pcluster: Not available on pcluster

rcluster, IOB: running program | Documentation | Installation | System

Running Program:

e.x.

genezilla <*.iso> <*.fasta> [options]
  options:
    -s: ignore sequences in FASTA shorter than N bases
    -i: load isochore predictions from file
    -c: load CpG island predictions from file

Documentation:

please refer to Genezilla User Guide

Installation: source file downloaded from Genezilla, compiled by gcc 3.3.6.

System(s): Unix