RCC: Research Computing Center

Home >

RESOURCES

Applications & Software
- Bioinformatics
  - Artemis
  - Bali-phy
  - Bioconductor
  - Bioperl
  - Blast Databases
  - Blast(NCBI)
    - Bl2seq
    - Blastall
    - Blastclust
    - Blastdb
    - Blastpgp
    - Fastacmd
    - Formatdb
    - Megablast
  - BLAT
  - CAP3
  - Clustalw
  - CONSEL
  - EMBOSS
  - FASTA
  - GCG
  - Genezilla
  - Genome (phred/phrap/consed)
  - hmmer
  - iprscan
  - LUCY
  - MrBayes
  - MSBlast
  - MUMmer
  - MUSCLE
  - PAML
  - PHYLIP
  - PHYML
  - polybayes
  - RAxML
  - RCCBatchBlast
  - RECON
  - RepeatMasker
  - SSAHA2
  - SVM_Light
  - WUBlast
- Computational Chemistry
  - 3D_Dock
  - Amber
  - GAMESS
  - Gaussian03
  - Gaussian94
  - Motecc
  - NAMD
  - NWCHEM
  - VMD
  - XPLOR-NIH
- Computational Physics
- Statistics
  - R
  - SAS
- Utilities
- Others
  - Maple
  - Mathematica
  - MatLab
  - NetCDF
- All Software
Systems
Documentation
Overview
FAQ (How To)
Policies
Locator
Home

SERVICES

Request an Account

Support and Questions

Application & Code Development

Consulting

Grantwriting Support

Blat

Category | Version | Author | Description
Program on:altix | inQuiry | pcluster | rcluster, IOB

Category(ies): Bioinformatics

Version: 3.4

Author / Distributor:

Description:

The BLAST-Like Alignment Tool, is more accurate and 500 times faster than popular existing tools for mRNA/DNA alignments and 50 times faster for protein alignments at sensitivity settings typically used when comparing vertebrate sequences, more details at here

altix: not available at Altix

inQuiry: not available at inQuiry

pcluster: Not available on pcluster

rcluster, IOB: running program | Documentation | Installation | System

Running Program: also refer to submit jobs to queues at rcluster,IOB

For test:

/usr/local/blat-latest/bin/blat

Documentation: Genome Research Blat Reprint.pdf, BLAT Program Specifications.doc, Web

Installation:

Source code downloaded from BLAT

System(s): Unix