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RECON

Category | Version | Author | Description
Program on:altix | inQuiry | pcluster | rcluster,IOB

Category(ies): Bioinformatics

Version: 1.05

Author / Distributor: Author: Zhirong Bao

Description:

RECON is a program for automated de novo identification of repeat families from genomic sequences

altix: Not available on altix

pcluster: Not available on pcluster

rcluster,IOB: running program | Documentation | Installation | System

Running Program: also refer to submit jobs to queues at rcluster,IOB

/usr/local/RECON-latest/scripts/recon.pl seq_name_list_file MSP_file integer

Sample of sub.sh

#!/bin/csh
cd working_directory
time /usr/local/RECON-latest/scripts/recon.pl < seq_name_list_file MSP_file integer > myout

bsub -q r1-24h -o test.%J.out -e test.%J.err ./sub.sh

Documentation: Online document available at RECON website and README, PDF at RCC

Installation: source downloaded from RECON website.

System(s): Unix